Passero K, Noll JG, Verma SS, Selin C, and Hall MA. (2024)
Longitudinal method comparison: modeling polygenic risk for post-traumatic stress disorder over time in individuals of African and European ancestry.
Frontiers in Genetics: 15 - 2024:1203577
Ruan B, Chen Y, Trimidal S, Koo I, Cai J, Mcguigan J, Hall MA, Patterson AD, Prabhu KS, Paulson RF. (2023)
Itaconate promotes the differentiation of murine stress erythroid progenitors by increasing Nrf2 activity.
bioRxiv: 2023.03.11.532211., Preprint. Blood Advances in revision.
Ruan B, Chen Y, Trimidal S, Koo I, Qian F, Cai J, Mcguigan J, Hall MA, Patterson AD, Prabhu KS, Paulson RF. (2023)
Nitric oxide regulates metabolism in murine stress erythroid progenitors to promote recovery during inflammatory anemia.
bioRxiv: 2023 Mar 11:2023.03.11.532207, Preprint. Blood in revision.
González Zarzar T, Palmiero N, Kim D, Shen L, Hall MA. (2023)
Sex-specific associations between phenotypes and environmental exposures (under review, Biology of Sex Differences).
Pre-print available at Research Square.
Passero K, Noll JG, Selin C, Hall MA. (2023)
Longitudinal method comparison: Modeling polygenic risk for posttraumatic stress disorder over time in individuals of African and European ancestry.
Frontiers in Genetics (revise and resubmission)
Zhou J, Palmiero N, Passero K, McGuigan JR, Zarzar TG, Prabhu KS, and Hall MA. (2023)
Environment-Wide Association Studies of Anemia in the National Health and Nutrition Examination Surveys.
Journal of Exposure Science and Environmental Epidemiology (under review): medRxiv 2023, 2023.06.02.23290861
Lee B, Wang J, Hall MA, Kim D, Stites SD, Shen L. (2023)
Sex modifies predictive effects of imaging and CSF biomarkers on cognitive and functional outcomes: A study of Alzheimer’s disease.
Neurobiology of Aging (in press)
Aguilar MA, Ebanks S, Markus H, Lewis MM, Midya V, Vrana, Huang X, Hall MA*, Kawasawa YI*. *Co-Corresponding Authors (2023)
Neuronally enriched microvesicle RNAs are differentially expressed in the serums of Parkinson’s patients.
Frontiers in Neuroscience: 12:1145923
Qian F, Nettleford SK, Zhou J, Arner BE, Hall MA., Sharma A, Annageldiyev C, Rossi RM, Tukaramrao DB, Sarkar D, Hegde S, Gandhi UH, Finch ER, Goodfield L, Quickel MD, Claxton DF, Paulson RF, Prabhu SK. (2023)
Activation of GPR44 decreases severity of myeloid leukemia via specific targeting of leukemia initiating stem cells.
Cell Reports: 42(112794)
Misra S, Lee T, Sebastian A, McGuigan J, Liao C, Koo I, Patterson AD, Rossi RM, Hall MA, Albert I, Prabhu KS. (2023)
Loss of selenoprotein W in murine macrophages alters the hierarchy of selenoprotein expression, redox tone, and mitochondrial functions during inflammation.
Redox Biology: 59(102571)
Zhou J, Guare L, Rico ALG, Zarzar TG, Palmiero N, Assimes TL, Verma SS, and Hall MA. (2023)
Flexibly encoded GWAS identifies novel nonadditive SNPs in individuals of African and European ancestry.
medRxiv: 2023.06.01.23290857.
González-Zarzar T, Lee B, Coughlin R, Kim D, Shen L, Hall MA (2022)
Sex Differences in the Metabolome of Alzheimer’s Disease Progression.
Frontiers in Radiology
Etzel L, Hastings WJ, Hall MA, Heim C, Meaney M, Noll JG, Rose E, Schreier H, Shenk C, Shalev I. (2022)
Obesity and accelerated epigenetic aging in a high-risk cohort of children.
Scientific Reports: 12(8328)
Li L*, Zhou J*, Ma Z, Bensi M, Hall MA, Raecher GB (2022)
Dynamic assessment of the COVID-19 vaccine acceptance leveraging social media data.
Journal of Biomedical Informatics
Molly A. Hall, John Wallace, Anastasia M. Lucas, Yuki Bradford, Shefali S. Verma, Bertram Müller, Myhsok, Kristin Passero, Jiayan Zhou, John McGuigan, Beibei Jiang, Sarah A. Pendergrass, Yanfei Zhang, Peggy Peissig, Murray Brilliant, Patrick Sleiman, Hakon Hakonarson, John B. Harley, Krzysztof Kiryluk, Kristel Van Steen, Jason H. Moore, Marylyn D. Ritchie. (2021)
Novel EDGE encoding method enhances ability to identify genetic interactions.
PLoS Genetics: 17(6)
Li J, Hall MA, Shalev I, Schreier H, González-Zarzar T, Marcovici I, Putnam F, Noll J. (2021)
Hypothalamic-pituitary-adrenal axis dysregulation and risk for obesity in sexually abused females.
Psychoneuroendocrinology: 129, 105254
Passero K, Setia-Verma S, McAllister K, Manrai A, Patel C, Hall MA (2021)
What about the environment? Leveraging multi-omic datasets to characterize the environment’s role in human health
Pacific Symposium on Biocomputing: 26, 309-315
Morris A. Aguilar, John McGuigan, and Molly A. Hall (2021)
Semi-automated NMR Pipeline for Environmental Exposures: New Insights on the Metabolomics of Smokers versus Non-smokers
Pacific Symposium on Biocomputing: 26, 316-327
Lingyao Li, Lei Gao, Jiayan Zhou, Zihui Ma, Molly A. Hall. (2021)
Can social media be utilized to enhance early warning: Retrospective analysis of the U.S. COVID-19 pandemic outbreak.
medRxiv
Zhou J, Passero K, Palmiero N, Mueller-Myhsok B, Kleber M, Maerz W, and Hall MA (2020)
Investigation of gene-gene interactions in cardiac traits and serum fatty acid levels in the LURIC Health Study
PloS one: 15(9), e0238304
Passero K, He X, Zhou J, Mueller-Myhsok B, Kleber ME, Maerz W, and Hall MA (2020)
Phenome-wide association studies on cardiovascular health and fatty acids considering phenotype quality control practices for epidemiological data.
Pacific Symposium on Biocomputing: 25, 659-670
Lucas AM*, Palmiero N*, McGuigan J, Passero K, Zhou J, Orie D, Ritchie MD, and Hall MA (2019)
CLARITE facilitates the quality control and analysis process for EWAS of metabolic-related traits.
Frontiers in Genetics: 10, 1240
Manduchi E, Chesi A, Hall MA, Grant SFA, Moore JH. (2018)
Leveraging putative enhancer-promoter interactions to investigate two-way epistasis in type 2 diabetes GWAS.
Pacific Symposium on Biocomputing: 23, 548-558
Hall MA, Cole B, Moore JH. (2018)
Gene-Gene Interactions: An Essential Component to Modeling Complexity for Precision Medicine.
Encyclopedia of Bioinformatics and Computational Biology: 2, 171-177
Cole B, Hall MA, Urbanowicz RJ, Gilbert-Diamond D, Moore JH (2018)
Analysis of Gene‐Gene Interactions
Current Protocols in Human Genetics: 95.1, 1-14
Hall MA, Wallace J, Lucas A, Kim D, Basile AO, Verma SS, McCarty CA, Brilliant MH, Peissig PL, Kitchner TE, Verma A, Pendergrass S, Dudek S, Moore JH, Ritchie MD (2017)
PLATO provides analytic framework for investigating complexity beyond genome-wide association studies
Nature Communications: 8, 1167
Manrai AK, Cui Y, Bushel PR, Hall MA, Karakitsios S, Mattingly CJ, Ritchie M, Schmitt C, Sarigiannis DA, Thomas DC, Wishart D, Balshaw DM, Patel CJ (2017)
Informatics and data analytics to support exposome-based discovery for public health
Annual Review of Public Health: 38, 279-294
Kim D, Volk H, Girirajan S, Pendergrass S, Hall MA, Verma SS, Schmidt RJ, Hansen RL, Ghosh D, Ludena-Rodriguez Y, Kim K, Ritchie MD, Hertz-Picciotto I, and Selleck SB (2017)
The joint effect of air pollution and copy number variation on risk for autism
Autism Research: 10, 1470-1480
De R, Verma SS, Holzinger ER, Hall MA, Burt A, Carrell DS, Crosslin DR, Jarvik GP, Kuivaniemi H, Kullo IJ, Lange LA, Lanktree MB, Larson EB, North KE, Reiner AP, Tragante V, Tromp G, Wilson JG, Asselbergs FW, Drenos F, Moore JH, Ritchie MD, Keating B, Gilbert-Diamond D (2017)
Identifying gene-gene interactions that are highly associated with four quantitative lipid traits across multiple cohorts
Human Genetics: 136, 165-178
Holzinger ER, Verma SS, Moore CB, Hall M, De R, Gilbert-Diamond D, Lanktree MB, Pankratz N, Amuzu A, Burt A, Dale C, Dudek S, Furlong CE, Gaunt TR, Kim DS, Riess H, Sivapalaratnam S, Tragante V, van Iperen EPA, Brautbar A, Carrell DS, Crosslin DR, Jarvik GP, Kuivaniemi H, Kullo IJ, Larson EB, Rasmussen-Torvik LJ, Tromp G, Baumert J, Cruickshanks KJ, Farrall M, Hingorani AD, Hovingh GK, Kleber ME, Klein BE, Klein R, Koenig W, Lange LA, Mӓrz W, North KE, Charlotte Onland-Moret N, Reiner AP, Talmud PJ, van der Schouw YT, Wilson JG, Kivimaki M, Kumari M, Moore JH, Drenos F, Asselbergs FW, Keating BJ, Ritchie MD (2017)
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals
BioData Mining: 10, 25